MindSpore
Molecular Simulation Introduction
Physics Driven
Data Driven
Physics Data Fusion
User Guide
Molecular Simulation
Molecular Structure Prediction
Molecular Properties Prediction
Molecular Design
Molecular Foundation Model
API References
mindsponge.cell
mindsponge.common
mindsponge.data
mindsponge.metrics
Constants
RELEASE NOTES
Release Notes
MindSpore
»
Index
Index
A
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B
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C
|
F
|
G
|
I
|
L
|
M
|
O
|
P
|
Q
|
R
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S
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T
|
V
|
W
A
apply_to_point() (in module mindsponge.common)
atom37_to_frames() (in module mindsponge.data)
atom37_to_torsion_angles() (in module mindsponge.data)
Attention (class in mindsponge.cell)
B
backbone() (in module mindsponge.metrics)
BalancedMSE (class in mindsponge.metrics)
between_residue_bond() (in module mindsponge.metrics)
between_residue_clash() (in module mindsponge.metrics)
BinaryFocal (class in mindsponge.metrics)
C
compute_renamed_ground_truth() (in module mindsponge.metrics)
F
find_optimal_renaming() (in module mindsponge.common)
frame_aligned_point_error() (in module mindsponge.metrics)
frame_aligned_point_error_map() (in module mindsponge.metrics)
G
get_aligned_seq() (in module mindsponge.common)
get_fasta_info() (in module mindsponge.common)
get_pdb_info() (in module mindsponge.common)
get_structural_violations() (in module mindsponge.metrics)
GlobalAttention (class in mindsponge.cell)
I
initial_affine() (in module mindsponge.common)
InvariantPointAttention (class in mindsponge.cell)
invert_point() (in module mindsponge.common)
invert_rigids() (in module mindsponge.common)
invert_rots() (in module mindsponge.common)
L
local_distance_difference_test() (in module mindsponge.metrics)
M
make_atom14_positions() (in module mindsponge.common)
make_transform_from_reference() (in module mindsponge.common)
MSAColumnAttention (class in mindsponge.cell)
MSAColumnGlobalAttention (class in mindsponge.cell)
MSARowAttentionWithPairBias (class in mindsponge.cell)
MultiClassFocal (class in mindsponge.metrics)
O
OuterProductMean (class in mindsponge.cell)
P
pre_compose() (in module mindsponge.common)
Q
quat_affine() (in module mindsponge.common)
quat_multiply_by_vec() (in module mindsponge.common)
quat_to_rot() (in module mindsponge.common)
quaternion_from_tensor() (in module mindsponge.common)
quaternion_to_tensor() (in module mindsponge.common)
R
rigids_from_3_points() (in module mindsponge.common)
rigids_mul_rigids() (in module mindsponge.common)
rigids_mul_rots() (in module mindsponge.common)
rigids_mul_vecs() (in module mindsponge.common)
rots_expand_dims() (in module mindsponge.common)
rots_from_tensor() (in module mindsponge.common)
rots_from_two_vecs() (in module mindsponge.common)
rots_mul_rots() (in module mindsponge.common)
rots_mul_vecs() (in module mindsponge.common)
rots_scale() (in module mindsponge.common)
rots_to_tensor() (in module mindsponge.common)
S
sidechain() (in module mindsponge.metrics)
supervised_chi() (in module mindsponge.metrics)
T
Transition (class in mindsponge.cell)
TriangleAttention (class in mindsponge.cell)
TriangleMultiplication (class in mindsponge.cell)
V
vecs_cross_vecs() (in module mindsponge.common)
vecs_dot_vecs() (in module mindsponge.common)
vecs_expand_dims() (in module mindsponge.common)
vecs_from_tensor() (in module mindsponge.common)
vecs_robust_norm() (in module mindsponge.common)
vecs_robust_normalize() (in module mindsponge.common)
vecs_scale() (in module mindsponge.common)
vecs_sub() (in module mindsponge.common)
vecs_to_tensor() (in module mindsponge.common)
W
within_residue_violations() (in module mindsponge.metrics)